Generates an Excel workbook containing information on all Analytical QC records that contain a given list of DTXSIDs — chemi_amos_analytical_qc

Usage

chemi_amos_analytical_qc_batch(
  base_url = NULL,
  ids = NULL,
  include_classyfire = NULL,
  include_functional_uses = NULL,
  include_source_counts = NULL,
  methodologies = NULL
)

Arguments

base_url: URL for the AMOS frontend. Used to construct the internal links in the output file.
ids: List of DTXSIDs or other identifiers to search for.
include_classyfire: Flag for whether to include the top four levels of a ClassyFire classification for each of the searched substances, if it exists.
include_functional_uses: Flag for whether to include functional use classifications based on the ChemFuncT ontology. Only exists for around 21,000 substances in the database.
include_source_counts: Flag for whether to include counts of a substance's appearances in patents, PubMed articles, and other external sources.
methodologies: Filters the returned results by analytical methodologies. This argument should be a dictionary with four keys with boolean values – "all", "GC/MS", "LC/MS", and "NMR". There are some methodologies with small numbers of records (e.g., IR spectra) which will only appear in the data if "all" is set to true.

Value

Returns a tibble with results

API stage

This wrapper was generated from the public API schema.

Examples

if (FALSE) { # \dontrun{
chemi_amos_analytical_qc_batch(base_url = "DTXSID1024122")
} # }